marieBvr

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About me

Welcome to my personal web page.

I am currently a Bioinformatics Ingineer at INRAe Biology of Fruit and Pathology. I work on plant viral metagnomics and develop semantic web solution to integrate heterogeneous biological data.



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Contact

Mail: marie.lefebvre@inrae.fr
Tel: +33 (0) 557 12 23 39
Twitter: @LefebvreMarie5
ORCID: 0000-0002-3093-5873

Past and current projects

INEXTVIR project (2019-2022)
Plant Health Bioinformatics Network (2019 - today)
MYCOVIR project (2019 - today)
EVENTS project (2018 - today)
COBRA project (2018 - today)
CATI Bioinformatics for Knowledge Analysis, Representation and Integration (2017 - today)
VIRVALID project (2016 - 2019)

Tools and Software

Publications

Find more about my lastest publication on HAL portal

CV

Background & position

October 2020-March 2021 - Long term mission at the Bioinformatics Group, Wageningen University and Research, NL
I was awarded a Staff Exchange Grant from the ELIXIR project to:

Since October 2017 - Bioinformatics ingineer permanent position at INRAe, Bordeaux, France
Development of virAnnot pipeline for viral metagenomic analyses. Databases and web interfaces development for plant viruses.

2016-2017 - Bioinformatics ingineer - LS2N Combinatory and Informatic, Nantes, France
Algorithm and web interface development for heterogeneous data integration through linked open data and semantic web (BioPAX model). SyMeTRIC Project

2014-2016 - Bioinformatics ingineer - INRAe Biology of Fruit and Pathology, Bordeaux, France
Database and Web interface development for NMR spectra and metadata. Metabohub Project
Tool integration for Galaxy Workflow4Metabolomics

2014 - Internship - INRA Evolution and quantitative genetic, Paris-Sud, France
R package integration in a web interface for the analysis of wheat varietal selection data. SHiHeMaS Project

Education & training

2020 - Hackaton Galaxy Interactive Tools (GEOC)

2017 - High-performance computing Course (Bordeaux Computing Center)

2015 - Tools integration for GALAXY (IFB Galaxy group)

2014 - Master’s degree: Bioinformatics (Nantes, France)

2012 - Licence’s degree: Biology, Geosciences, Chemistry (Nantes, france) Option: Environmental Biology